Collaboration Without Barriers. Discovery Without Delay.

Manifold’s Trusted Research Environment (TRE) applies AI to simplify secure collaboration and accelerate scientific discovery

Unify Every Part of the Research Collaboration Journey

Manifold’s TRE brings together the people, data, and tools that drive modern scientific discovery. Whether you're sharing commercial datasets, collaborating across institutions, or supporting population-scale research, Manifold removes the friction that slows progress while keeping sensitive data fully protected.

Commercial Data Delivery

License and share high-value datasets without losing control. CROs, diagnostics companies, and data aggregators provide governed, access-based environments where partners explore and analyze data securely — without copying, exporting, or exposing raw assets.

Cross-Institutional Collaboration

Work seamlessly with external researchers — without moving sensitive data. AMCs and research institutions grant collaborators secure access to patient cohorts, compute resources, and analysis tools, while your IP remains protected.

Population-Scale Biobanking

Harmonize multi-modal datasets across sites to accelerate precision medicine. Research consortia and national biobank programs unify genomic, clinical, imaging, and biomarker data with consistent governance, reproducibility, and scalable computational infrastructure.

Work Faster, Together

Manifold’s TRE removes operational bottlenecks that slow research teams down. By combining self-service access, integrated compute, and built-in governance, Manifold empowers researchers to move from question to insight in minutes — not weeks.

AI Exploratory Analysis

Start exploring as soon as you’re in the TRE. AI agents helps low-code users onboard to unfamiliar datasets, sanity-check hypotheses, and get fast feasibility answers backed by lightweight EDA. The work is fully inspectable—see the code and the logic—then bring in deeper high-code support only when it’s worth it.

Unified Tooling

One secure environment for AI, analytics, and bioinformatics. Researchers can use common high code data science environments and AI agents — all running inside the TRE. No data relocation. No infrastructure maintenance. Everything teams need to work lives in one governed platform.

Data Science

Give every researcher instant access to the tools, data, and compute they need. Launch notebooks, pipelines, dashboards, and exploratory analysis environments without IT tickets or provisioning delays. Manifold TRE turns slow, manual processes into intuitive, self-service workflows for scientific teams.

Scalable Workflows

Build repeatable analyses that scale from pilot studies to population-level research.
Manifold’s TRE provides version-controlled environments, standardized pipelines, and lineage tracking so teams can reproduce results with scientific rigor — while increasing throughput across large datasets and multi-site projects.

Governed Access

Collaborate freely while maintaining strict security and regulatory control. Manifold enforces granular permissions, PHI protections, export controls, and immutable audit logs — all aligned with SOC 2, HIPAA, and GDPR. Sensitive data stays contained, even when working with external institutions.

Collaboration Ready

Keep researchers, data scientists, and collaborators in sync — no matter where they work. Shared workspaces, unified data catalogs, and built-in governance ensure that every participant sees the same data, logic, and results. This alignment eliminates duplication, reduces errors, and accelerates collaborative discovery.

The Results Speak for Themselves

Broad Clinical Labs needed to deliver BGE and WGS sequencing data to customers on AWS, moving beyond simple file delivery. By partnering with Manifold, they now deliver data directly to AWS where customers browse QC data, variants, and files using AI. In addition, their customers can upload phenotypic data that automatically joins with genotype data—delivering far more value than traditional file delivery.

Foundation Medicine needed to accelerate drug development for biopharma partners using their comprehensive 800,000+ patient genomic dataset. FoundationInsights® 2.0, powered by Manifold, enabled this with natural language search and advanced analytics, giving partners a one-stop shop to rapidly identify patient cohorts, explore genomic alterations, and extract insights faster than ever before.

Broad Institute's Spatial Transcriptomics Platform team needed to transform how spatial omics samples are processed and delivered to researchers, moving from manual workflows to an integrated delivery system. By partnering with Manifold, they now process samples, run spatial sequencing workflows, and deliver all outputs directly into a pre-configured workbench with CellDega software, giving researchers immediate access to interactive analysis tools.

Solutions

Fit-for-purpose solutions for clinical research leaders in cancer and rare disease.

Cancer Observational Study

Streamline legacy systems and manual processes with a single study and data management platform.

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Cancer Center Biobank

Reduce and turnaround time and increase productivity by connecting biospecimen data and clinical data in a single data management platform.

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Cancer Center Registry

Unify clinical and multimodal data on a modern platform to enable automated data preparation into a research-ready patient model.

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Rare Disease Registry

Answer research questions about diagnoses, treatments, and outcomes quickly and easily.

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